miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|299862762|gb|FR611107.1|FR611107 CTGGACCTTGGCTGTCACTCAGTTACGAATACTCGCCTCCCTTGCCGTCTCTGCTTTTTGAGAGAAATGGAGCAAGACGA
TGTGGACATGGCTGCCTCAGAGAACACCAACGAAGCGGAACTCGACGACATGAAGAAGCGGTTGAAGGAGATGGAGGACG
AAGCAGCTGCTCTACGAGAGATGCAAGCCAAGGTCGAGTCTCAGATGGGTTCCGCACAAGATCCTGCTAGTGCAGCTGCA
ACACAGGCAAATCGAGAGGAAGCAGATTCTCGATCAGTGTTTGTTGGCAATGTGGATTATTCGTGTACTCCTGAAGAGGT
ACAGCAGCATTTCCAGACATGTGGGACAGTCAACAGAGTCACTATTCGGACTGACAAGTTTGGCCAGCCAAAGGGTTATG
CTTATGTGGAATTCCTTGAAGTAGAGGCTGTTCAAGAGGCTCTCCAGTTGAATGAATCTGAACTACATGGACGCCAATTG
AAGGTAACTGCTAAAC




Most similar to sp|Q9DDY9|PAB2A_XENLA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus
           laevis GN=pabpn1-a PE=2 SV=1
          Length = 296

 Score =  125 bits (314), Expect = 1e-28
 Identities = 65/146 (44%), Positives = 94/146 (64%), Gaps = 4/146 (2%)
 Frame = +1

Query: 70  EQDDVDMAASENTNEAELDDMKKRLKEMEDEAAALREMQAKVESQMGXXXXXXXXXXXXX 249
           E++  ++   +   + EL+ +K R++EME+EA  L+E+Q +VE QM              
Sbjct: 93  EEEPGELTGDQTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIM 152

Query: 250 NREE---ADSRSVFVGNVDYSCTPEEVQQHFQTCGTVNRVTIRTDKF-GQPKGYAYVEFL 417
           + EE   AD+RS++VGNVDY  T EE++ HF  CG+VNRVTI  DKF G PKG+AY+EF 
Sbjct: 153 SVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFC 212

Query: 418 EVEAVQEALQLNESELHGRQLKVTAK 495
           + E+V+ +L L+ES   GRQ+KV  K
Sbjct: 213 DKESVRTSLALDESLFRGRQIKVVPK 238